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Approaches To Bridge The Gap Between -Omics And
Physiology
Sponsored by the
APS
Physiological Genomics Group
Education and Systems Biology
(-omics) Tracks
Sunday, April 19 — 10:30 AM-12:30 PM
Ernest N. Morial Convention Center, Room 235/236
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| Chaired: |
Albert A. de Graaf, TNO Quality of Life,
The Netherlands
Neema Jamshidi, UCSD |
Thanks to automation and development of
high-throughput techniques, a wealth of data on genomics, gene
expression, proteomics, and metabolomics are being amassed in the
biomedical sciences. However, most of this data is collected at the
cellular level of organization whereas a detailed characterization of
physiology and phenotype at the whole organism level is still
low-throughput and invasive. A fundamental challenge for modern
biomedical science, therefore, is to somehow connect these data at
different spatial, temporal and dimensionality scales. Although
statistical analysis is still the method of choice to deal with the
high dimensionality of –omics datasets, the use of more
physiology-driven data analysis approaches is increasing. This symposium
aims to present current different experimental and modeling approaches
applied to the various levels of organization that have the potential,
when combined, to bridge gaps in the coverage by experimental and
computational models of the range from cells to humans.
Presentations will center on bioinformatic
methods to reconstruct physiologically relevant regulatory and metabolic
networks, experimental approaches to generate key functional data (with a
special role of stable isotopes), and mathematical computational approaches
to integrate data at different levels of mechanistic detail, with a focus on
liver and GI metabolism.
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10:30 AM |
A challenge in modelling – linking molecular
mechanisms to physiology.
Albert de Graaf, TNO, The Netherlands |
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10:35 AM |
Role of genome-scale human metabolic
reconstruction in establishing genotype-phenotype relationships.
Neema Jamshidi, UCSD |
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11:00 AM |
Measuring metabolic fluxes in vivo: GI/liver
functional pathway outputs.
Mick Deutz, Univ. of Arkansas for Med. Sci. |
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11:30 AM |
Multi-scale spatial-temporal modelling of liver
regeneration after intoxication.
Dirk Drasdo, INRIA, France |
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12:00 PM |
Physiological modeling of disease and disease
processes.
Mikhail Gishizky, Entelos, Inc. |
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